PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08791g02002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 385aa    MW: 42439.7 Da    PI: 8.4778
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08791g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.76.1e-3953113262
                    zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                               ++  lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ +
  Niben101Scf08791g02002.1  53 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 113
                               56789*****************************************************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.2E-3356111IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-2757111IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.52557111IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105995IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLRDCEKMVL IPSSTTNEWP QQNIQSDEKI LMMSSNGGSD MEKPIQDQQQ QQQQPPLKCP  60
RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RIKRPSASSS  120
SPHDITTTSS SALNNTISAT NPSHHHNHIH GSHNIDISST TSSNHLNPLF YGLNTERSDL  180
NNNPFARLFS SRVSNATGEG QVYSLTDSIP GLDRRLGLGF SSSSGLMGEN NYGHGFNSIK  240
QIQDVMTNSN TTNSSSLLSS YPMFGSSSTS SSFSTMASLI ASSLQQQKFM SNGNNFYGLA  300
PYEELQMSGN NNNTNNVEGG NGMTMVKKEK MEGGGQNRLN WNNHSNHQNH QIHEQIMNST  360
DPSLSWNGAW LDPSNMGSNS VPSLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441727.10.0PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLM1CWS81e-128M1CWS8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000764471e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.19e-37Dof family protein